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Jaiswal, Pankaj
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2014
P. Jaiswal
,
“
Plant Environmental Condition Ontology (EO)
”
. Phenotype Research Coordination Network, Biosphere2, Tucson, AZ, 2014.
2013
E. Huala
,
“
Development of a Unified Phenotype Dataset for Plants
”
. San Diego, CA, 2013.
L. Cooper
,
“
Development of the Reference Plant Trait Ontology: A Unified Resource for Plant Phenomics
”
. San Diego, CA, 2013.
B. Atkinson
,
“
Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines
”
,
Botany 2013
. New Orleans, LA, 2013.
L. Cooper
and
Walls, R. L.
,
“
The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses
”
,
Plant & Cell Physiology
, vol. 54, pp. 1-23, 2013.
P. Jaiswal
,
“
A Resource for a Common Reference Ontology for Plants
”
,
Plant and Animal Genome XXI Meeting
. San Diego, CA, 2013.
E. Arnaud
,
“
The Species-Specific Crop Ontology (Generation Challenge Programme): Application and Integration into the Reference Plant Trait Ontology to Enable Data Mining on Phenotypes
”
,
Plant and Animal Genome XXI Conference
. San Diego, CA, 2013.
2012
L. D. Cooper
,
“
Annotating Gene Expression in
Physcomitrella patens
using the Plant Ontology: Facilitating Cross-Taxa Comparisons
”
. San Diego, CA, 2012.
L. D. Cooper
,
“
Annotating the Maize B73 Gene Expression Atlas – A Plant Ontology Use Case for Genomics Data Curation
”
. Washington DC, USA, 2012.
P. Jaiswal
,
“
Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.
”
. Portland, OR, 2012.
L. D. Cooper
,
“
Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa
”
. San Diego, CA, 2012.
F. Lens
,
Cooper, L.
,
Gandolfo, M. A.
,
Groover, P.
,
Jaiswal, P.
,
Lachenbruch, R.
,
Spicer, R.
,
Staton, D.
,
Stevenson, D. W.
,
Walls, R. L.
, and
Wegrzyn, J.
,
“
An extension of the Plant Ontology project supporting wood anatomy and development research
”
,
IAWA Journal
, vol. 33, pp. 113-117, 2012.
R. L. Walls
,
“
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources
”
, in
3rd International Conference on Biomedical Ontology (ICBO 2012)
, Graz, Austria, 2012.
R. L. Walls
,
Athreya, B.
,
Cooper, L.
,
Elser, J.
,
Gandolfo, M. A.
,
Jaiswal, P.
,
Mungall, C. J.
,
Preece, J.
,
Rensing, S.
,
Smith, B.
, and
Stevenson, D. W.
,
“
Ontologies as Integrative Tools for Plant Science
”
,
American Journal of Botany
, vol. 99, no. 8, pp. 1263-75, 2012.
J. Preece
,
“
The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa
”
. Robinson College, Cambridge, UK, 2012.
L. Cooper
,
“
The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa
”
,
Plant Biology 2012
. Austin, Tx, 2012.
L. D. Cooper
,
“
The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa
”
,
Plant and Animal Genome XX Conference
. San Diego, CA, 2012.
E. Arnaud
,
Cooper, L.
,
Shrestha, R.
,
Menda, N.
,
Nelson, R. T.
,
Matteis, L.
,
Skofic, M.
,
Bastow, R.
,
Jaiswal, P.
,
Mueller, L.
, and
McLaren, G.
,
“
Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotype
”
, in
International Conference on Knowledge Discovery and Information Retrieval (IC3K2012)
, Barcelona, Spain, 2012.
2011
V. Shulaev
,
Sargent, D. J.
,
Crowhurst, R. N.
,
Mockler, T. C.
,
Folkerts, O.
,
Delcher, A. L.
,
Jaiswal, P.
,
Mockaitis, K.
,
Liston, A.
,
Mane, S. P.
,
Burns, P.
,
Davis, T. M.
,
Slovin, J. P.
,
Bassil, N.
,
Hellens, R. P.
,
Evans, C.
,
Harkins, T.
,
Kodira, C.
,
Desany, B.
,
Crasta, O. R.
,
Jensen, R. V.
,
Allan, A. C.
,
Michael, T. P.
,
Setubal, J. C.
,
Celton, J. - M.
,
Rees, J. D. G.
,
Williams, K. P.
,
Holt, S. H.
,
Rojas, J. J. R.
,
Chatterjee, M.
,
Liu, B.
,
Silva, H.
,
Meisel, L.
,
Adato, A.
,
Filichkin, S. A.
,
Troggio, M.
,
Viola, R.
,
Ashman, T. - L.
,
Wang, H.
,
Dharmawardhana, P.
,
Elser, J.
,
Raja, R.
,
Priest, H. D.
,
Bryant, D. W.
,
Fox, S. E.
,
Givan, S. A.
,
Wilhelm, L. J.
,
Naithani, S.
,
Christoffels, A.
,
Salama, D. Y.
,
Carter, J.
,
Girona, E. L.
,
Zdepski, A.
,
Wang, W.
,
Kerstetter, R. A.
,
Schwab, W.
,
Korban, S. S.
,
Davik, J.
,
Monfort, A.
,
Denoyes-Rothan, B.
,
Arus, P.
,
Mittler, R.
,
Flinn, B.
,
Aharoni, A.
,
Bennetzen, J. L.
,
Salzberg, S. L.
,
Dickerman, A. W.
,
Velasco, R.
,
Borodovsky, M.
,
Veilleux, R. E.
, and
Folta, K. M.
,
“
The genome of woodland strawberry (
Fragaria vesca
)
”
,
Nat Genet
, vol. 43, pp. 109 - 116, 2011.
J. Preece
,
“
Planteome Annotation Wiki: A Semantic Application for the Community Curation of Plant Genotypes and Phenotypes
”
, in
4th International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2011)
, London, UK, 2011, pp. 96-97.
R. L. Walls
,
“
Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets
”
. Cold Spring Harbor Laboratory, New York, 2011.
R. L. Walls
,
“
Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in
Physcomitrella patens
”
. Black Forest, Germany, 2011.
2010
J. L. Elser
,
“
Computer Demonstration: Plant Ontology: Databases and Applications
”
. San Diego, CA, 2010.
J. L. Elser
,
“
Plant Ontology: Databases And Applications
”
. 2010.
J. Preece
,
Elser, J.
, and
Jaiswal, P.
,
“
A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species
”
, in
NETTAB 2010 conference on Biological Wikis
, Naples, Italy, 2010, pp. 109-112.
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